Table 6

Table of covering fuzzy tandem repeats for polyalanine TR.

Gene code

Seq length

Cover

TR-beg

TR-end

FTR-beg

FTR-end

FTR/TR

Cover/Length


FOXL2

9900

5000

6079

6115

6082

6258

4.888

0.505

ZIC2

11701

677

8385

8429

8304

8534

5.227

0.057

PHOX2B

11889

187

7940

7993

7830

8015

3.490

0.015

ARX

19255

1039

7252

7299

7199

7424

4.787

0.053

SOX3

9074

1114

5700

5744

5584

6191

13.795

0.122

RUNX2

10000 (*)

766

99435

99485

99310

99488

3.560

0.076

HOXA13

10227

658

5375

5428

5328

5493

3.113

0.064

HOXD13

10135

279

5256

5300

5025

5304

6.340

0.027

PABPN1

12976

1337

6286

6303

6278

6405

7.470

0.103


Table of covering fuzzy tandem repeats for polyalanine TR. The table reports: gene code, sequence length, length of the region covered by FTRs, TR expansion begin and TR expansion end, FTR begin and FTR end, ratio of FTR length over TR length, ratio of region covered by FTRs over total sequence length. (*) indicates that a subsequence has been analyzed.

Pellegrini et al. BMC Bioinformatics 2012 13(Suppl 4):S3   doi:10.1186/1471-2105-13-S4-S3

Open Data