Email updates

Keep up to date with the latest news and content from BMC Bioinformatics and BioMed Central.

This article is part of the supplement: Italian Society of Bioinformatics (BITS): Annual Meeting 2011

Open Access Research

CONS-COCOMAPS: a novel tool to measure and visualize the conservation of inter-residue contacts in multiple docking solutions

Anna Vangone1, Romina Oliva2* and Luigi Cavallo1

Author Affiliations

1 Department of Chemistry and Biology, University of Salerno, Via Ponte Don Melillo, Fisciano (SA), 84084, Italy

2 Department of Applied Sciences, University "Parthenope" of Naples, Centro Direzionale Isola C4, Naples, 80143, Italy

For all author emails, please log on.

BMC Bioinformatics 2012, 13(Suppl 4):S19  doi:10.1186/1471-2105-13-S4-S19

Published: 28 March 2012

Additional files

Additional file 1:

Inter-residue conservation scores. Table reporting inter-residue conservation scores at different percentages of the ten docking solutions submitted to CAPRI by each Predictor. The Q-score, based on the CAPRI assessment, is also reported for each Target/Predictor.

Format: DOC Size: 311KB Download file

This file can be viewed with: Microsoft Word Viewer

Open Data

Additional file 2:

Consensus map from the P89 predictor for T25. Comparison between the CONS-COCOMAPS consensus map (b) obtained from the 10 models submitted for the CAPRI target T25 by the P89 predictor, and the intermolecular contact map (a) of the corresponding native structure (PDB code: 2J59).

Format: TIF Size: 1MB Download file

Open Data

Additional file 3:

Consensus maps for T24, T28 and T36. Comparison between the CONS-COCOMAPS consensus maps (b,d,f) obtained from all the 300, 320 and 200 models submitted to CAPRI for the targets T24, T28 and T36, respectively, and the intermolecular contact maps (a,c,e) of the corresponding native structures (PDB codes: 2J59, 2ONI and 2W5F).

Format: PDF Size: 3.6MB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 4:

Consensus maps for T25, T26 and T32 from incorrect models. Comparison between the CONS-COCOMAPS consensus maps (b,d,f) obtained from the 268, 276 and 316 incorrect models submitted to CAPRI for the targets T25, T26 and T32, respectively, and the intermolecular contact maps (a,c,e) of the corresponding native structures (PDB codes: 2J59, 2HQS and 3BX1).

Format: PDF Size: 3.8MB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 5:

Ten most conserved inter-residue contacts for T24 and corresponding distances in the native structure.

Format: DOC Size: 48KB Download file

This file can be viewed with: Microsoft Word Viewer

Open Data