Table 3

Predicted binding residues for the GDPRAN-NTF2 complex

CHAIN

RESIDUE

RESIDUE NUM

BIND

NON-BIND

PDBINDER PROPENSITY VALUE


PDBinder predictions

D

G

19

311

627

0.332

D

G

20

409

487

0.456

D

T

21

200

491

0.289

D

G

22

868

754

0.535

D

K

23

1112

267

0.806

D

T

24

476

557

0.461

D

T

25

418

535

0.439

D

N

122

405

244

0.624

D

K

123

381

156

0.709

D

D

125

145

163

0.471

D

S

150

227

433

0.344

D

A

151

343

809

0.298

D

K

152

31

175

0.150


Q-SiteFinder predictions

A

Q

65

1

109

0.009

A

S

67

57

532

0.097

A

Q

88

14

221

0.060

A

L

89

24

1168

0.020

A

I

96

9

313

0.028

A

G

98

82

741

0.100

A

A

122

16

538

0.029

A

H

124

3

26

0.103

B

M

97

8

207

0.037

B

G

98

96

741

0.115

B

A

122

19

568

0.032

B

H

124

3

22

0.120

B

F

126

0

10

0.000

D

V

40

33

1820

0.018

D

A

41

44

1033

0.041

D

T

42

36

426

0.078


Binding site residues predicted by Q-SiteFinder and PDBinder on GDPRAN-NTF2 complex (PDB: 1a2k). The only false positive residue identified by PDBinder is S150.

Bianchi et al. BMC Bioinformatics 2012 13(Suppl 4):S17   doi:10.1186/1471-2105-13-S4-S17

Open Data