Additional file 5.

NumtS compilation comparisons. Differences in NumtS number and length (bp) in same species are due to different assembly and differences in parameters used to launch in silico hybridization. Discrepancies observed in both chimpanzee and rhesus macaque data between our results and those reported in [3], where the same assemblies and same e-value were used, cannot be explained, because information on Blast running in [3] is not complete. Instead, trend of differences observed in mouse match assembly time and parameters.

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Calabrese et al. BMC Bioinformatics 2012 13(Suppl 4):S15   doi:10.1186/1471-2105-13-S4-S15