Table 6

Analysis of the CIC-0 protein belonging to the Chloride Channel family

Protein

Tandem repeats found by


ID

Acc #

Length

PTRStalker

HHRep

TRUST

RADAR


CLC-0[CICH_TORMA]

P21564

805aa

[8-289]

[119-220]

[82-195]

[102-154]

[291-575]

[174-260]

[196-303]

[161-205]

[214-265]

[517-627]

[542-597]

[447-483]

[329-353]

[628-800]

[718-770]

[484-527]

[386-407]

[528-564]


For each algorithm that returned at least a result we report the fuzzy repeated subsequences detected by giving its start and its end position. Note that XSTREAM, T-REKS, and HHrepID are not listed here because they could not find any repetitive structure.

Pellegrini et al. BMC Bioinformatics 2012 13(Suppl 3):S8   doi:10.1186/1471-2105-13-S3-S8

Open Data