Table 1

Notations in the algorithms

v.ali

Whether the protein v is already aligned. The initial value is false.

N (v)

{v'|v' is the neighbor of v and v'.ali = false}

Net(v)

The network where protein v is in.

S(v)

The match-set containing protein v.

Net(S(v))

The networks where at least one protein in S(v) is in.


Shih and Parthasarathy BMC Bioinformatics 2012 13(Suppl 3):S11   doi:10.1186/1471-2105-13-S3-S11

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