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Resolution: standard / high Figure 3.
Segmentation maps of the MALDI-imaging dataset. Optical image (A) and segmentation maps (B-F) of the dataset from Figure 2 but with
80 μm spatial resolution. B. Straightforward k-means clustering of spectra. C. Hierarchical
clustering (Euclidean distance, complete linkage) after PCA-reduction of spectra to
70% explained variance. D. Clustering after edge-preserving image denoising; moderate
denoising, reprinted from [30] with permission from American Chemical Society. E-F. Efficient spatially-aware clustering,
moderate size of data-adaptive neighborhood (E) and large size of non-adaptive neighborhood
(F), reprinted from [52] with permission from Elsevier.
Alexandrov BMC Bioinformatics 2012 13(Suppl 16):S11 doi:10.1186/1471-2105-13-S16-S11 |