Table 1

Initial data for the analysis of gain and loss of genes in distant phyla of the animal kingdom.

Species

Source URL

Number of models

Input data size (MB)


Arabidopsis thaliana

ftp://ftp.arabidopsis.org/home/tair/home/tair/ webcite

27416

14.72

Amphimedon queenslandica

http://getentry.ddbj.nig.ac.jp/top-e.html?ACUQ00000000 webcite

30060

11.87

Branchiostoma floridae

http://genome.jgi-psf.org/Brafl1/Brafl1.home.html webcite

50817

24.34

Capsaspora owczarzaki

http://www.broadinstitute.org/annotation/genome/multicellularity_project/GenomeDescriptions.html webcite

8792

6.2

Daphnia pulex

http://wfleabase.org/genome/Daphnia_pulex/ webcite

30810

10.94

Homo sapiens

http://www.gencodegenes.org/ webcite

87069

42.55

Lottia gigantea

http://genome.jgi-psf.org/Lotgi1/Lotgi1.home.html webcite

23851

9.72

Monosiga brevicollis

http://genome.jgi-psf.org/Monbr1/Monbr1.home.html webcite

9171

5.77

Nematostella vectensis

http://genome.jgi-psf.org/Nemve1/Nemve1.home.html webcite

27273

9.76

Saccoglossus kowalevskii

ftp://ftp.hgsc.bcm.tmc.edu/pub/data/Skowalevskii/fasta webcite

13149

8.14

Trichoplax adhaerens

http://genome.jgi-psf.org/Triad1/Triad1.home.html webcite

27416

14.72

Strongylocentrotus purpuratus

http://www.spbase.org/SpBase/download/ webcite

42420

22.07


Ptitsyn and Moroz BMC Bioinformatics 2012 13(Suppl 15):S5   doi:10.1186/1471-2105-13-S15-S5

Open Data