Table 4

Putative sRNA identified in identified in M. haemolytica PHL213 using the Rfam database

sRNA_ID

Start

End

strand

rfam-id

rfam accession

G+C content


MHS45

698093

698190

-

Bacteria_small_SRP

RF00169

49

MHS46

902602

902713

-

MOCO_RNA_motif

RF01055

33

MHS47

2002337

2002433

+

TPP

RF00059

51

MHS48

2339489

2339566

-

Alpha_RBS

RF00140

32

MHS49

2687066

2687209

-

GcvB

RF00022

34


EIRs that do not have either a BLASTX hits or predicted promoter or rho-independent terminator, but with matches in Rfam database. sRNA locus, strand specificity and description based on Rfam.

Reddy et al. BMC Bioinformatics 2012 13(Suppl 15):S4   doi:10.1186/1471-2105-13-S15-S4

Open Data