Table 2

Suggested corrections made to the existing annotation of M. haemolytica PHL213

Protein ID

Gene start

Gene end

Gene length

Protein length

Strand

Corrected start

Corrected end

Corrected gene length

Corrected protein length

Correction Type


MHA_0097

91433

92209

777

258

-

91433

92281

849

282

Mutated Start (L)

MHA_0304

314414

316213

1800

599

+

314210

316213

2004

667

Mutated Start (L)

MHA_0344

367264

368961

1698

565

+

367186

368961

1776

591

Mutated Start (L)

MHA_0410

430731

431060

330

109

+

430650

431060

411

136

Alternate Start

MHA_0591

615640

616941

1302

433

-

615640

617052

1413

470

Alternate Start

MHA_0736

750172

751350

1179

392

+

750121

751350

1230

409

Alternate Start

MHA_0819

821700

822038

339

112

+

821472

822038

567

188

Mutated Start (L)

MHA_1225

1209899

1211335

1437

478

+

1209791

1211335

1545

514

Alternate Start

MHA_1712

1697137

1698519

1383

460

+

1696987

1698519

1533

510

Alternate Start

MHA_2666

2591266

2592276

1011

336

-

2591266

2592360

1095

364

Alternate Start

MHA_2723

2659955

2660545

591

196

-

2659955

2660692

738

245

Alternate Start


Previously annotated gene locus, length and strand specificity. Observed locus based on RNA-Seq expression along with gene length (bp) and protein length (aa) and the description of the annotation error. In case of a mutated start, the amino acid start codon identified by RNA-Seq.

Reddy et al. BMC Bioinformatics 2012 13(Suppl 15):S4   doi:10.1186/1471-2105-13-S15-S4

Open Data