Additional file 3.

Comparison of co-expressed gene pairs identified by RNA-Seq and operons predicted by DOOR. Sheet 1 labeled 'MH_DOOR' has a list of operons predicted by DOOR. Sheet 2 labeled 'MH_DOOR_Pairwise' contains a list of co-expressed gene pairs predicted by DOOR. Sheet 3 labeled 'MH_JR' contains a list of operons identified in our RNA-Seq experiment. Sheet 4 labeled 'MH_JR_Pairs' contains a list of co-expressed gene pairs identified by RNA-Seq. Sheet 6 labeled 'MH_Pairwise_Common' contains a list of co-expressed gene pairs common to both DOOR and RNA-Seq. Sheet 7 labeled 'MH_DOOR_Unique' contains a list of co-expressed gene pairs unique to DOOR. Sheet 8 labeled 'MH_JR_Unique' contains a list of co-expressed gene pairs unique to our RNA-Seq experiment.

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Reddy et al. BMC Bioinformatics 2012 13(Suppl 15):S4   doi:10.1186/1471-2105-13-S15-S4