Additional file 11.

Figure S6: TM-score and ED. The samples obeying the hypothesis are shown in blue diamonds, the exceptions are shown in red rectangles and where the ED difference was zero is shown in green triangles (A, B and C). (A) The distribution of the minimum/maximum TM-score. (B) The distribution of the ED of corresponding TM-score. (C) X-axis: differences of the maximum TM-score subtract the equivalent minimum TM-score; Y-axis: differences of the ED of the maximum TM-score subtract the ED of the minimum TM-score. (D) Gap difference of the exceptions. X-axis (gap-openings) and Y-axis (gap-extensions) are the differences of the gaps of the maximum TM-score subtract the minimum TM-score, respectively. The dots in quadrant IV indicate the gap-openings of the maximum TM-score are higher than the minimum TM-score, but the gap-extensions are reverse. The Venn diagram shows the dot number in quadrants I, II, III and IV, and on the axes and the origin e.g. there are 39 dots at the origin.

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Zhang and Su BMC Bioinformatics 2012 13(Suppl 15):S12   doi:10.1186/1471-2105-13-S15-S12