Table 7

GAGE comparison statistics on Rhodobacter sphaeroides contigs

Assembler

#Ctg

NG50

Chaff %

Dupl %

Comp %

Indels ≤ 5 bp

Indels > 5 bp

Inv

Rel


ABySS

1916

5872

1.67

10.07

0.49

278

34

2

17

Allpaths-LG

203

42455

0.01

0.38

0.33

150

37

0

6

Bambus2

176

93198

0.00

0.00

0.25

149

363

0

5

CABOG

321

20211

0.00

0.12

0.71

145

24

1

9

MSR-CA

394

22128

0.02

1.05

0.53

179

32

1

8

GapFiller+PHRAP

1584

7809

0.12

0.49

0.76

158

14

2

7

SGA

3073

2284

3.49

0.05

0.98

114

5

0

5

SOAPdenovo

204

131681

0.44

1.07

0.54

155

406

0

8

Velvet

583

15665

0.55

0.29

0.96

148

27

0

8


Nadalin et al. BMC Bioinformatics 2012 13(Suppl 14):S8   doi:10.1186/1471-2105-13-S14-S8

Open Data