Table 6

GAGE comparison statistics on Staphylococcus aureus contigs

Assembler

#Ctg

NG50

Chaff %

Dupl %

Comp %

Indels ≤ 5 bp

Indels > 5 bp

Inv

Rel


ABySS

301

29198

6.71

23.06

0.98

20

9

3

2

Allpaths-LG

59

96740

0.03

0.03

1.26

4

12

0

4

Bambus2

108

50192

0.00

0.01

1.27

56

164

2

11

MSR-CA

93

59152

0.02

0.71

0.88

23

10

6

7

GapFiller+PHRAP

90

42398

0.00

0.28

1.07

12

4

0

3

SGA

1253

4005

21.34

0.01

1.26

2

2

1

3

SOAPdenovo

106

288184

0.35

1.42

1.39

25

31

1

16

Velvet

161

48440

0.46

0.14

1.31

6

14

5

9


Nadalin et al. BMC Bioinformatics 2012 13(Suppl 14):S8   doi:10.1186/1471-2105-13-S14-S8

Open Data