Table 2

Taxonomy distribution over samples

Phylum

Readcount1

Readcount2

Z1

Z2


root

207235

210000

4.281

4.281

Archaea

15046

17879

15.613

15.627

Bacteria

161268

152968

14.806

14.808

Eukaryota

30921

39153

31.098

31.152

Fungi

20141

25403

24.657

24.698

Metazoa

6456

8101

13.634

13.656

Viridiplantae

4324

5649

13.268

13.297

Dikarya

20141

25403

24.657

24.698

Actinobacteria

4323

2841

17.509

17.605

Ascomycota

20141

25403

24.657

24.698

Bacteroidetes

89950

79208

26.118

26.131

Chordata

6456

8101

13.634

13.656

Euryarchaeota

15046

17879

15.613

15.627

Firmicutes

42408

46791

14.675

14.680

Fusobacteria

2797

3530

9.215

9.231

Fusobacteria

2797

2947

1.979

1.979

Proteobacteria

21790

20598

5.790

5.790

Streptophyta

4324

5649

13.268

13.297

Craniata

6456

8101

13.634

13.656

Pezizomycotina

7813

9558

13.240

13.257

Saccharomycotina

12328

15845

20.953

20.995

Gnathostomata

6456

8101

13.634

13.656

Bacilli

4234

5129

9.249

9.260

Bacteroidia

8234

6936

10.539

10.548

Betaproteobacteria

6256

5832

3.856

3.857

Clostridia

28095

30316

9.190

9.191

Eurotiomycetes

7813

9558

13.240

13.257

Flavobacteriia

1414

1896

8.378

8.400

Fusobacteria

2455

3530

13.896

13.952

Fusobacteria

2455

2947

6.694

6.701

Gammaproteobacteria

12291

10599

11.183

11.191

Liliopsida

4324

5649

13.268

13.297

Mammalia

6456

8101

13.634

13.656

Methanobacteria

7673

9583

14.540

14.562

Saccharomycetes

12328

15845

20.953

20.995

Thermococci

7373

8296

7.374

7.377

Eurotiomycetidae

7813

9558

13.240

13.257

Commelinids

4324

5649

13.268

13.297

Euarchontoglires

6456

8101

13.634

13.656

Bacteroidales

8234

6936

10.539

10.548

Clostridiales

28095

30316

9.190

9.191

Enterobacteriales

12291

10599

11.183

11.191

Eurotiales

7813

9558

13.240

13.257

Flavobacteriales

1414

1896

8.378

8.400

Fusobacteriales

2455

2947

6.694

6.701

Lactobacillales

4234

5129

9.249

9.260

Methanobacteriales

7673

9583

14.540

14.562

Neisseriales

6256

5832

3.856

3.857

Poales

4324

5649

13.268

13.297

Primates

6456

8101

13.634

13.656

Saccharomycetales

12328

15845

20.953

20.995

Thermococcales

7373

8296

7.374

7.377

Haplorrhini

6456

8101

13.634

13.656

Hominoidea

6456

8101

13.634

13.656

Bacteroidaceae

8234

6936

10.539

10.548

Clostridiaceae

2545

3048

6.726

6.733

Enterobacteriaceae

12291

10599

11.183

11.191

Fusobacteriaceae

2455

2947

6.694

6.701

Hominidae

6456

8101

13.634

13.656

Lachnospiraceae

7272

9245

15.352

15.379

Methanobacteriaceae

7673

9583

14.540

14.562

Neisseriaceae

6256

5832

3.856

3.857

Poaceae

4324

5649

13.268

13.297

Ruminococcaceae

18278

18023

1.338

1.338

Saccharomycetaceae

12328

15845

20.953

20.995

Streptococcaceae

4234

5129

9.249

9.260

Thermococcaceae

7373

8296

7.374

7.377

Trichocomaceae

7813

9558

13.240

13.257

Homininae

6456

8101

13.634

13.656

Pooideae

4324

5649

13.268

13.297

Triticeae

4324

5649

13.268

13.297

Aegilops

4324

5649

13.268

13.297

Bacteroides

8234

6936

10.539

10.548

Buchnera

6526

4039

24.196

24.368

Clostridium

2545

3048

6.726

6.733

Emericella

7813

9558

13.240

13.257

Escherichia

3423

4023

6.953

6.959

Faecalibacterium

8768

7754

7.889

7.892

Fusobacterium

2455

2947

6.694

6.701

Homo

6456

8101

13.634

13.656

Kluyveromyces

6161

7431

10.893

10.905

Methanothermobacter

7673

9583

14.540

14.562

Neisseria

6256

5832

3.856

3.857

Pyrococcus

7373

8296

7.374

7.377

Ruminococcus

9510

10269

5.397

5.398

Saccharomyces

6167

8414

18.608

18.664

Aegilops tauschii

4324

5649

13.268

13.297

Bacteroides thetaiotaomicron

8234

6936

10.539

10.548

Buchnera aphidicola

6526

4039

24.196

24.368

Emericella nidulans

7813

9558

13.240

13.257

Escherichia coli

3423

4023

6.953

6.959

Faecalibacterium prausnitzii

8768

7754

7.889

7.892

Fusobacterium nucleatum

2455

2947

6.694

6.701

Homo sapiens

6456

8101

13.634

13.656

Kluyveromyces lactis

6161

7431

10.893

10.905

Methanothermobacter thermautotrophicus

7673

9583

14.540

14.562

Neisseria gonorrhoeae

6256

5832

3.856

3.857

Pyrococcus horikoshii

7373

8296

7.374

7.377

Ruminococcus gnavus

5255

6709

13.293

13.318

Ruminococcus torques

4255

3560

7.862

7.870

Saccharomyces cerevisiae

6167

8414

18.608

18.664


List of the Z-scores obtained using Poisson distribution on the analysed metagenomics data. This statistical evaluation highlights the correlation between the reads distribution in the taxonomy found in the samples from patient with UC and CD.

Merelli et al. BMC Bioinformatics 2012 13(Suppl 14):S5   doi:10.1186/1471-2105-13-S14-S5

Open Data