Figure 3.

The Human Magnesome output. A typical output of the human magnesome site (BAR-hMG). The test sequence inherits, after cluster based HMM alignment to the corresponding templates (listed in the inset), five binding residues (K 21, S 22, T 40, D 63 and T 64). The residues are color coded depending on the BLOSUM 62 alignment scoring matrix. From the result page is also possible to retrieve the matching BAR+ cluster page and the corresponding UniProtKB page of the target entry. The green color in the output indicates residues identical to the original template/s. Similar residues are highlighted in yellow. The yellow star indicates that the protein is located in a cluster where Mg binds to PDB templates (listed) in a documented structural way. Cluster HMM can be downloaded.

Piovesan et al. BMC Bioinformatics 2012 13(Suppl 14):S10   doi:10.1186/1471-2105-13-S14-S10