Table 1

three datasets

Data Set

A

B


Caltecha

Normal Blood

Embryonic Stem Cells


Rep1Gm12878CellLongpolyaBow0981x32

PairedRep1H1hescCellPapErng32aR2x75


Rep2Gm12878CellLongpolyaBow0981x32

PairedRep2H1hescCellPapErng32aR2x75


PairedRep1Gm12878CellLongpolyaBb12x75

PairedRep3H1hescCellPapErng32aR2x75


PairedRep2Gm12878CellLongpolyaBb12x75

PairedRep4H1hescCellPapErng32aR2x75


Chiangb

Knock-out of TDP-43

Wild Type


GSM546932_A_sorted

GSM546935_B_sorted


GSM546933_D_sorted

GSM546936_C_sorted


GSM546934_E_sorted


Bullardc

Brain

UHR library A

UHR library B


SRR037457

SRR037466

SRR037470


SRR037458

SRR037467

SRR037471


SRR037468

SRR037472


SRR037469


a from reference [28]

b from reference [22]

c from reference [13]

Cai et al. BMC Bioinformatics 2012 13(Suppl 13):S5   doi:10.1186/1471-2105-13-S13-S5

Open Data