Email updates

Keep up to date with the latest news and content from BMC Bioinformatics and BioMed Central.

This article is part of the supplement: UT-ORNL-KBRIN Bioinformatics Summit 2012

Open Access Meeting abstract

Regulation of cell proliferation and apoptosis by growth hormone during zebrafish auditory hair cell regeneration

Gopinath Rajadinakaran1, Huifang Sun1, Claire Rinehart1, Eric Rouchka2 and Michael Smith1*

Author affiliations

1 Department of Biology and Bioinformatics and Information Science Center, Western Kentucky University, Bowling Green, KY 42101, USA

2 Department of Computer Engineering and Computer Science, University of Louisville, Louisville, KY 40292, USA

For all author emails, please log on.

Citation and License

BMC Bioinformatics 2012, 13(Suppl 12):A3  doi:10.1186/1471-2105-13-S12-A3

The electronic version of this article is the complete one and can be found online at: http://www.biomedcentral.com/1471-2105/13/S12/A3


Published:31 July 2012

© 2012 Rajadinakaran et al; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Background

In order to develop treatments or preventive measures for auditory hair cell loss, an understanding of both the process of auditory hair cell regeneration and factors that influence this process, is needed. Our previous microarray analysis showed that growth hormone (GH) was significantly upregulated during zebrafish auditory hair cell regeneration, coupled with cell proliferation [1,2]. We further tested the effects of GH on zebrafish auditory hair cell regeneration by injecting GH after sound exposure and found that GH can efficiently promote post-trauma auditory hair cell regeneration, which may be achieved through stimulating proliferation and suppressing apoptosis [3]. In the current study, we used Next Generation Sequencing (NGS) to examine the possible GH pathways involved in zebrafish auditory hair cell regeneration.

Materials and methods

Groups of 20 zebrafish were exposed to a 150 Hz tone at 179 dB re 1 μPa RMS for 40 h. Following acoustic exposure, the fish were injected with either phosphate buffer, GH, or a GH antagonist. In addition, one baseline group received no acoustic stimulus or injection. RNA was extracted from the inner ear tissues and cDNA was synthesized for NGS. Data was generated using the Illumina Pipeline version SCS 2.8.0 and sequence alignment was done using TopHat. The aligned reads were then annotated using Cufflink and the differential expression of transcripts was performed by Cuffdiff. Only the statistically significant reads were used in further analysis and pathways were examined using Ingenuity Pathway Analysis (IPA).

Results and conclusions

Genes associated with cellular growth and proliferation, cell cycle, cell death, cancer, tissue development, and neurological disease were highly regulated in our data sets comparing baseline to buffer-injected fish, buffer-injected to antagonist-injected fish, and buffer-injected to GH-injected fish. Heat maps (Figure 1) and canonical signaling pathways were generated using IPA. We further examined the effect of GH by analyzing the GH receptor pathway. Interestingly, we found the JAK-STAT pathway to be highly upregulated in buffer-injected and GH-injected conditions but a strong downregulation was observed in the antagonist-injected condition. We also found the upregulation of IGF2 and downregulation of SOCS in the GH condition while the reverse was observed in the antagonist condition. These results suggest that GH influences zebrafish hair cell regeneration by promoting proliferation and suppressing apoptosis through the JAK-STAT pathway.

thumbnailFigure 1. Heat maps for cell death and cell growth/proliferation functions generated by IPA under different treatment conditions (BI-buffer injected, GH-growth hormone, ANT-antagonist) at 1 day post-sound exposure. GH downregulates (blue) cell death pathways and upregulates (orange) cellular growth and proliferation pathways, while the opposite pattern is found for the GH antagonist.

Acknowledgements

We thank Cofactor Genomics for performing the NGS. We also thank Abdallah Eteleeb and Dr. Robert Flight of the Univ. of Louisville for their assistance with NGS analysis, and Yajie Wang and Elizabeth Malloy for RNA sample preparation. This project was supported by grants from the National Center for Research Resources (5 P20 RR016481-12) and the National Institute of General Medical Sciences (8 P20 GM103436-12) from the National Institutes of Health.

References

  1. Schuck JB, Sun H, Penberthy WT, Cooper NGF, Li X, Smith ME: Transcriptomic analysis of the zebrafish inner ear points to growth hormone mediated regeneration following acoustic trauma.

    BMC Neuroscience 2011, 12:88. PubMed Abstract | BioMed Central Full Text | PubMed Central Full Text OpenURL

  2. Schuck JB, Smith ME: Cell proliferation follows acoustically-induced hair cell bundle loss in the zebrafish saccule.

    Hear Res 2009, 253:67-76. PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL

  3. Sun H, Lin C-H, Smith ME: Growth hormone promotes hair cell regeneration in the zebrafish (Danio rerio) inner ear following acoustic trauma.

    PLoS ONE 2011, 6:e28372. PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL