Table 5

Statistical significance of functional modules predicted by various methods

Algorithms

No. of Modules size>=3

No. of Significant Modules

Average Size

Maximum

f-measure of BP

-log(p-value)

Parameters


MCODE

59

54

83.8

549

0.296

10.87

fluff = 0.1; VWP = 0.2

CFinder

245

157

10.2

1409

0.246

4.49

K = 3

DPClus

217

187

5.23

25

0.335

6.78

Density = 0.7;CPin=0.5

COACH

746

608

8.54

44

0.272

6.96

Null

GSM-CA

187

168

7.37

79

0.362

8.6

CNin=0.5

GSM-FC

113

106

9.65

118

0.359

10.46

Null


He et al. BMC Bioinformatics 2012 13(Suppl 10):S19   doi:10.1186/1471-2105-13-S10-S19

Open Data