Table 2

Summary of results

Factor

Alternatives

Better

Worse


1. Gene sets

Genuine

Random

2. Ranking algo

Global

SAM-GS, GSEA

3. Sets forming features

high ranking, 1:10 (best ten sets)

low ranking, 1 (best set)

4. Aggregation*

SetSig, SVD

AVG


See Section Main Results for details on how the conclusions were determined.

*Difference not significant if Factor 3 is 1:10.

Holec et al. BMC Bioinformatics 2012 13(Suppl 10):S15   doi:10.1186/1471-2105-13-S10-S15

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