Table 2

Highly expressed transcription factor regulated genes

Cell line

V$HEN1_01

V$HEN1_02

Total


YUMAC

90 (6.7 × 10-6)

108 (9.0 × 10-16)

5534

YUSAC2

31 (0.0055)

21 (0.25)

1795

YULAC

19 (0.36)

40 (2.1 × 10-9)

1514

YUSIT1

11 (0.022)

8 (0.15)

504

YUGEN8

18 (0.022)

10 (0.73)

977

YURIF

3 (0.64)

6 (0.31)

440

WW165

30 (0.054)

27 (0.091)

4015


Table showing the seven melanoma cell lines; the total number of genes positively expressed that are directly regulated by V$HEN1_01 and V$HEN1_02 along with the P-Value from the Fisher Test comparing this with the overall distribution of highly expressed genes; and the total number of genes positively expressed overall in the cell line.

Holford et al. BMC Bioinformatics 2012 13(Suppl 1):S10   doi:10.1186/1471-2105-13-S1-S10

Open Data