Table 3

Analysis of variance for a mixed effect design in coding sequence modeling
Sum of squares DF Mean squares F-value p-value
Method 0.19 1 0.189 92.92 p < 0.001
Sequence 0.08 2 0.040 19.53 p < 0.001
Method:Sequence 0.08 2 0.038 18.66 p < 0.001
Species 0.10 11 0.009 4.45 p < 0.001
Residual 0.11 55 0.01

Analysis of variance for transformed performance (see Method section) as an effect of Method (IMM or CPPLS), Sequence (sequence representation DNA, protein, codon) and their interaction Method:Sequence. The estimated standard deviation of the random effect of Species is <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/97/mathml/M13','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/97/mathml/M13">View MathML</a>= 0.077 and for the Residual <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/97/mathml/M14','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/97/mathml/M14">View MathML</a> = 0.049.

Mehmood et al.

Mehmood et al. BMC Bioinformatics 2012 13:97   doi:10.1186/1471-2105-13-97

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