Table 2

Comparison with annotated elements
Arabidopsis vs Arabidopsis Total Detected Detected (%)
Gene 27169 3462 12.7
Trans. Element gene 3899 118 3.0
Pseudogene 871 220 25.2
Unknown gene 23 3 13.0
pre-tRNA 631 120 19.0
miRNA 174 19 10.9
snoRNA 71 8 11.3
Other RNA 301 29 9.6

The different types of annotated elements detected by TUs. The first column gives the number of annotated elements of each type in TAIR10. The second column gives the number of such element that are covered by TUs. The detected percentage of regions is indicated in the last column. The predicted TUs are enriched in pseudo-genes and pre-tRNA which often appear in clusters.

Audemard et al.

Audemard et al. BMC Bioinformatics 2012 13:83   doi:10.1186/1471-2105-13-83

Open Data