Table 9

Pairwise comparison of cis-correlations
dist. dist.Any dist.Any overl. over.Any over.Any over.Plus
(< 10 k) (< 100 k) (> 0%) (> 10%)
distance
Chin - 15 7 8 15 14 8
TCGA II - 5869 778 1253 1632 1641 1253
distanceAny (< 10 k)
Chin 1 - 10 17 15 15 17
TCGA II 919 - 5957 6153 5694 5698 6153
distanceAny (< 100 k)
Chin 11 9 - 9 11 10 9
TCGA II 6102 5821 - 1808 1812 1823 1808
overlap
Chin 1 9 4 - 8 7 0
TCGA II 1294 6090 1770 - 1883 1885 0
overlapAny (> 0%)
Chin 10 12 14 13 - 5 13
TCGA II 2071 5807 2131 2116 - 168 2116
overlapAny (> 10%)
Chin 10 12 14 11 3 - 11
TCGA II 2074 5810 2137 2122 161 - 2122
overlapPlus
Chin 1 9 4 0 8 7 -
TCGA II 1294 6090 1770 0 1883 1885 -

The upper triangle contains the number of genes (within the set of intersecting genes) with cis-correlations (Spearman) of the column matching procedure exceeding those of the row matching procedure. Low triangle similar, but defined vice versa. Recall the number of intersecting genes equals 157 (Chin) and 31947 (TCGA II).

van Wieringen et al.

van Wieringen et al. BMC Bioinformatics 2012 13:80   doi:10.1186/1471-2105-13-80

Open Data