Table 10

Results of downstream analysis
Chin TCGA I TCGA II
(157) (17352) (31947)
distance matching
individual 4009 929 9845
intersection 66 913 9768
distanceAny matching (< 10000 bp)
individual 74 914 9772
intersection 66 932 9769
distanceAny matching (< 100000 bp)
individual 787 937 9814
intersection 66 924 9740
overlap matching
individual 675 912 9824
intersection 66 911 9801
overlapAny matching (> 0%)
individual 684 937 9810
intersection 67 935 9779
overlapAny matching (> 0.10%)
individual 640 937 9809
intersection 67 935 9778
overlapPlus matching
individual 737 920 9859
intersection 66 909 9800

Number of genes with a significant cis-effect at FDR < 0.05 for the data set-matching combinations. The number of genes is displayed for data sets as yielded by each matching procedure individually, and for the data sets confined to the set of intersecting genes. The total number of intersecting genes is given directly below to the data set name.

van Wieringen et al.

van Wieringen et al. BMC Bioinformatics 2012 13:80   doi:10.1186/1471-2105-13-80

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