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Open Access Highly Accessed Methodology article

Inferring high-confidence human protein-protein interactions

Xueping Yu, Anders Wallqvist and Jaques Reifman*

Author Affiliations

Biotechnology High-Performance Computing Software Applications Institute, Telemedicine and Advanced Technology Research Center, U.S. Army Medical Research and Materiel Command, Ft. Detrick, MD, 21702, USA

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BMC Bioinformatics 2012, 13:79  doi:10.1186/1471-2105-13-79

Published: 4 May 2012

Additional files

Additional file 1:

Aggregated human physical PPI data. This tab-delimited text file contains the aggregated PPI data based on publications collected from nine databases: BIND, BioGRID, DIP, HPRD, IntAct, MINT, MIPS, PDZBase, and Reactome.

Format: TXT Size: 2.4MB Download file

Open Data

Additional file 2:

Direct interactions supported by known complexes in PDB. This tab-delimited file contains the protein pairs that have direct contact in at least one protein complex in PDB.

Format: TXT Size: 7KB Download file

Open Data

Additional file 3:

IDBOS Ranked PPI data. This tab-delimited file contains the aggregated PPI data set with the corresponding IDBOS ranking.

Format: TXT Size: 4.5MB Download file

Open Data

Additional file 4:

Occurrence Ranked PPI data. This tab-delimited file contains the aggregated PPI data set with the corresponding occurrence ranking.

Format: TXT Size: 1.7MB Download file

Open Data

Additional file 5:

Hypergeometric Ranked PPI data. This tab-delimited file contains the aggregated PPI data set with the corresponding hypergeometric ranking.

Format: TXT Size: 2.3MB Download file

Open Data