Table 1

Comparison with NetworkX and igraph
Memory required (MB) Time required (sec)
EpiFire API 45 0.830
NetworkX 1,400 15.4
Igraph 93 0.995

Performance comparison with NetworkX and igraph, generating random networks with 100,000 nodes, Poisson(10) degree distribution. Network generation in NetworkX was performed using the fast_gnp_random_graph() function.

Hladish et al.

Hladish et al. BMC Bioinformatics 2012 13:76   doi:10.1186/1471-2105-13-76

Open Data