Table 1

Mapsembler time and memory requirements on large data-sets
Reads data set Mapping time (s) Assembly time (s) Total time (s) Memory (MB)
S10K <1 <1 1 <1.5
S100K 1 2 5 <1.5
S1M 14 6 40 <1.5
S10M 170 95 442 <1.5
S100M 1813 903 3983 <1.5

Time and memory requirements for targeted assembly of 10 starters using increasingly large human genome read data sets. Mapping time corresponds to the mapping phase (Algorithm 1, Steps 1 to 5). Assembly time corresponds to the assembly phase (Steps 18 to 14) per iteration.

Peterlongo and Chikhi

Peterlongo and Chikhi BMC Bioinformatics 2012 13:48   doi:10.1186/1471-2105-13-48

Open Data