Table 1

Numbers of retained and filtered transcripts through steps 3-5 of lncRScan
Test data extract_ORF(Step 3) extract_PhyloCSF(Step 4) extract_Pfam(Step 5)
Retained Filtered Retained Filtered Retained Filtered
D-1 (1615 lncRNAs) 952(58.95%) 663 813(50.34%) 139 771(47.74%) 42
D-2 (1615 mRNAs) 33(2%) 1582 12(0.74%) 21 6(0.37%) 6
D-3 (3230 mRNAs) 89(2.76%) 3141 45(1.44%) 44 10(0.31%) 35
D-4 (4845 mRNAs) 112(2.31%) 3733 50(1.03%) 62 18(0.37%) 32

Sun et al.

Sun et al. BMC Bioinformatics 2012 13:331   doi:10.1186/1471-2105-13-331

Open Data