Table 1 |
||
| Viral miRNAs in the study, divided into two groups | ||
| hcmv-miR- | No. of targets | |
| US25-1-3p | 49 | |
| US5-2-3p | 70 | |
| UL36-5p | 92 | |
| US5-1-3p | 97 | |
| UL22A-5p | 176 | |
| UL112-3p | 186 | |
| A | US25-1-5p | 212 |
| US33-3p | 278 | |
| US25-2-3p | 310 | |
| UL22A-3p | 310 | |
| US33-5p | 320 | |
| US25-2-5p | 352 | |
| UL36-3p | 861 | |
| US5-2-5p | 71 | |
| US22-3p | 102 | |
| US4-3p | 271 | |
| UL112-5p | 295 | |
| B | US4-5p-shift5∗ | 297 |
| US29-3p | 314 | |
| US29-5p∗∗ | 339 | |
| US22-5p | 482 | |
A) miRNAs from miRBase, Release 18 [1]; (B) additional miRNAs recently found by Deep Sequencing [29,30]. Each group is sorted by the number of targets. ∗The sequence of miR-US4-5p that was detected by deep sequencing in [29,30] was shifted by 5 bp at the 5′end from the miRBase sequence, we included the shifted sequence in the datasets. ∗∗Denoted as US33a in [29]. In addition, mature miRNAs from miR-UL70 were not detected by the deep-sequencing, thus they were not included in the analysis.
Veksler-Lublinsky et al. BMC Bioinformatics 2012 13:322 doi:10.1186/1471-2105-13-322
