Table 5

Results of Mixed Replica search vs. REMC – original measures (int = 0.2)
Algorithm MR (t) CE (t) SH (t) HE (t) NE (t) Mixed∗∗ (t)
Bulk maize data set (275)
REMC 0.572 1.0s 0.641 2.0s 4.531 2.0s 0.667 1.0s 3.446 3.0s 10.680 15.0s
MixRep 0.572 0.45s 0.641 0.46s 4.531 0.49s 0.667 0.50s 3.446 0.59s 10.680 2.2s
Original 0.440 0.521 4.399 0.620 2.937
Accession maize data set (521)
REMC 0.694 4.0s 0.752 4.0s 4.670 5.0s 0.676 3.0s 3.502 20.0s 11.086 50.1s
MixRep 0.695 1.1s 0.752 0.68s 4.670 1.1s 0.676 0.67s 3.502 3.8s 11.087 17.1s
Original 0.630 0.696 4.467 0.591 2.742
Flax data set (708)
REMC 0.511 5.0s 0.511 4.0s 5.340 30.0s 0.262 4.0s 1.469 30.0s 8.874 60.4s
MixRep 0.512 1.6s 0.512 1.7s 5.340 0.80s 0.263 0.83s 1.469 1.6s 8.878 13.0s
Original 0.468 0.468 5.285 0.222 1.377
Pea data set (1283)
REMC 0.591 50.0s 0.595 30.0s 3.553 7.0s 0.437 15.0s 1.865 15.0s 7.876 61.2s
MixRep 0.593 3.2s 0.597 3.1s 3.556 1.5s 0.440 1.4s 1.867 7.7s 7.945 37.6s
Original 0.509 0.515 3.482 0.381 1.713
Large pea data set (4429)
REMC 0.577 03m41s 0.580 08m49s 3.470 08m37s 0.448 04m29s 1.875 05m22s 7.621 10m03s
MixRep 0.594 01m18s 0.596 53.5s 3.486 39.6s 0.465 36.3s 1.886 47.3s 7.811 10m21s
Original 0.464 0.466 3.348 0.352 1.609

*For each combination of algorithm, dataset and evaluation measure, 20 independent runs were performed from which averaged results are reported. By default runs were limited by a runtime of 60 seconds, except for the large pea dataset where a runtime limit of 10 minutes was applied.

**Results shown are those of a pseudo-index containing all seven measures with equal weights.

These results were computed on the helios server.

Beukelaer et al.

Beukelaer et al. BMC Bioinformatics 2012 13:312   doi:10.1186/1471-2105-13-312

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