Table 1 |
|||
| Bioinformatics Resource Manager (BRM) v2.3 capabilities | |||
| Data Management | XREF Identifier Retrieval | ||
| • Organization and Storage | • Gene Identifiers (NCBI) | ||
| • Versioning | • Protein Identifiers (UniParc) | ||
| • Meta-data tracking | • Cross Species Orthologs (Ensembl) | ||
| • Importing data from clipboard, EDMS | • Prokaryotic Identifiers (CMR) | ||
| Data Processing and Editing | miRNA Datasource Retrieval | ||
| • Dataset Merging | • miRNA Predicted Targets | ||
| • Table Features (OpenOffice Calc) | • (TargetScan, microCosm, microRNA) | ||
| • Extraction of Embedded Data/IDs | • miRNA Identifiers | ||
| • Column Merging/Splitting | • miRNA Metadata | ||
| • Duplicate Row Removal | |||
| • Edit Column Headers | DatWorkflows | ||
| • Affymetrix QC/Normalization (R) | |||
| Batch Annotations Retrieval | • Network Inference (CLR, Pearson) | ||
| • Gene Ontology (GO) | |||
| • Pathways (KEGG) | Data Analysis and Visualization* | ||
| • Gene Annotation (NCBI, CMR, miRNA) | • Clustering (MeV) | ||
| • Protein Annotation (Uniparc, CMR) | • Network Visualization (Cytoscape) | ||
| • Protein Interactions (BIND, Prolinks) | • Functional Enrichment (DAVID) | ||
*Data broadcast via GAGGLE framework.
Tilton et al. BMC Bioinformatics 2012 13:311 doi:10.1186/1471-2105-13-311
