Table 5

Gene deletion calls in the BI dataset
Population Sample Gene name Gene function Chr Start [bp] End [bp] Posterior probability RDobserved RDexpected
CHD NA18695 TPM3 tropomyosin 3 1 152396739 152422219 1.000 166 337
JPT NA19066 TPM3 tropomyosin 3 1 152396739 152422219 1.000 169 288
CHD NA18687 RPL27A ribosomal protein L27a 11 8661325 8663929 1.000 93 182
JPT NA18983 POU5F1 POU class 5 homeobox 1 6 31240357 31241803 1.000 122 256
JPT NA19066 POU5F1 POU class 5 homeobox 1 6 31240357 31241803 1.000 166 318
JPT NA19066 RPL27A ribosomal protein L27a 11 8661325 8663929 1.000 106 203
CHD NA18687 TPM3 tropomyosin 3 1 152396739 152422219 1.000 155 258
CHD NA18687 POU5F1 POU class 5 homeobox 1 6 31240357 31241803 1.000 156 285
JPT NA19054 TPM3 tropomyosin 3 1 152396739 152422219 1.000 135 230
CHD NA18695 POU5F1 POU class 5 homeobox 1 6 31240357 31241803 1.000 194 371
JPT NA18960 SETD8 SET domain containing (lysine methyltransferase) 8 12 122441130 122455574 1.000 221 347
CHD NA18164 RPL27A ribosomal protein L27a 11 8661325 8663929 1.000 129 223
JPT NA19054 POU5F1 POU class 5 homeobox 1 6 31240357 31241803 1.000 130 254
CHD NA18695 SETD8 SET domain containing (lysine methyltransferase) 8 12 122441130 122455574 1.000 142 309
CHD NA18695 RPL27A ribosomal protein L27a 11 8661325 8663929 1.000 128 238
CHD NA18695 AKR1B1 aldo-keto reductase family 1, member B1 (aldose reductase) 7 133778020 133787045 1.000 310 554
CHD NA18164 HAX1 HCLS1 associated protein X-1 1 152512874 152514801 1.000 214 339
CHD NA18687 SETD8 SET domain containing (lysine methyltransferase) 8 12 122441130 122455574 1.000 125 237
JPT NA19054 HFE hemochromatosis 6 26201326 26202433 1.000 56 122
JPT NA18983 RPL27A ribosomal protein L27a 11 8661325 8663929 0.990 95 164
JPT NA18983 TPM3 tropomyosin 3 1 152396739 152422219 0.990 147 232
JPT NA19561 TRIM55 tripartite motif-containing 55 8 67202058 67209944 0.990 119 193
CHD NA18687 RBMS1 RNA binding motif, single stranded interacting protein 1 2 160840394 160932124 0.990 334 575
CHB NA18757 CRIPAK cysteine-rich PAK1 inhibitor 4 1378300 1379640 0.990 327 669
JPT NA19054 PSAT1 phosphoserine aminotransferase 1 9 80109471 80113319 0.980 140 253
JPT NA19066 PSAT1 phosphoserine aminotransferase 1 9 80109471 80113319 0.980 190 317
CHD NA18164 TPM3 tropomyosin 3 1 152396739 152422219 0.980 209 317
JPT NA19568 OR8A1 olfactory receptor, family 8, subfamily A, member 1 11 123945175 123946141 0.980 471 764
JPT NA19066 RAN RAN, member RAS oncogene family 12 129923334 129926424 0.980 229 462
CHD NA18695 KLHL12 kelch-like 12 1 201128284 201160913 0.970 767 1358
JPT NA19066 SETD8 SET domain containing (lysine methyltransferase) 8 12 122441130 122455574 0.970 154 265
JPT NA19066 RPS15A ribosomal protein S15a 16 18706886 18707936 0.960 83 161
CHD NA18695 RPS15A ribosomal protein S15a 16 18706886 18707936 0.960 88 188
CHD NA18687 KLHL12 kelch-like 12 1 201128284 201160913 0.960 621 1041
JPT NA18983 SETD8 SET domain containing (lysine methyltransferase) 8 12 122441130 122455574 0.960 120 213
JPT NA18983 DCTN5 dynactin 5 (p25) 16 23560365 23585966 0.960 177 298
JPT NA18983 EIF2B5 eukaryotic translation initiation factor 2B, subunit 5 epsilon, 82 kDa 3 185500333 185509372 0.940 856 1482
CHD NA18687 ARG2 arginase, type II 14 67187855 67187951 0.940 28 62
CHD NA18695 PSAT1 phosphoserine aminotransferase 1 9 80109471 80113319 0.930 221 371
CHD NA18695 RBMS1 RNA binding motif, single stranded interacting protein 1 2 160840394 160932124 0.900 442 750
JPT NA19561 OR8A1 olfactory receptor, family 8, subfamily A, member 1 11 123945175 123946141 0.890 254 466
YRI NA19247 TIMM8B translocase of inner mitochondrial membrane 8 homolog B (yeast) 11 111461229 111462657 0.880 40 89
CHD NA18164 POU5F1 POU class 5 homeobox 1 6 31240357 31241803 0.850 226 349
CHD NA18164 KLHL12 kelch-like 12 (Drosophila) 1 201128284 201160913 0.800 803 1276
CHD NA18164 SETD8 SET domain containing (lysine methyltransferase) 8 12 122441130 122455574 0.790 181 291
CHD NA18687 RPS15A ribosomal protein S15a 16 18706886 18707936 0.790 81 144
JPT NA19066 EIF2B5 eukaryotic translation initiation factor 2B, subunit 5 epsilon, 82 kDa 3 185500333 185509372 0.780 1137 1840
JPT NA19568 GABARAPL2 GABA(A) receptor-associated protein-like 2 1 157676173 157676631 0.760 254 476
JPT NA19560 OR8A1 olfactory receptor, family 8, subfamily A, member 1 11 123945175 123946141 0.750 614 1119
JPT NA19058 RPL27 ribosomal protein L27 17 38404294 38408463 0.730 356 518
CHD NA18699 SDPR serum deprivation response 2 192408894 192419896 0.720 524 1033
JPT NA18983 SPRR2G small proline-rich protein 2 G 1 151388989 151389210 0.670 81 147
JPT NA19066 SPRR2G small proline-rich protein 2 G 1 151388989 151389210 0.670 105 182
JPT NA19066 RBMS1 RNA binding motif, single stranded interacting protein 1 2 160840394 160932124 0.670 404 642
JPT NA19054 EIF2B5 eukaryotic translation initiation factor 2B, subunit 5 epsilon, 82 kDa 3 185500333 185509372 0.670 869 1470
CHD NA18695 RAN RAN, member RAS oncogene family 12 129923334 129926424 0.660 290 539

Wu et al.

Wu et al. BMC Bioinformatics 2012 13:305   doi:10.1186/1471-2105-13-305

Open Data