Table 3

Gene duplication calls in the SC dataset
Population Sample Gene name Gene function Chr Start [bp] End [bp] Posterior probablity RDobserved RDexpected
CEU NA12348 CD300LB CD300 molecule-like family member b 17 70030472 70039195 1.000 638 420
TSI NA20533 CLDN10 claudin 10 13 95003009 95028269 1.000 2108 1582
CHB NA18526 SNRNP27 small nuclear ribonucleoprotein 27‚ÄČkDa (U4/U6.U5) 2 69974621 69977184 1.000 530 383
CHB NA18532 CES1 carboxylesterase 1 (monocyte/macrophage serine esterase 1) 16 54401930 54424468 1.000 501 337
TSI NA20752 NOM1 nucleolar protein with MIF4G domain 1 7 156435193 156455158 1.000 1335 966
TSI NA20796 AHNAK AHNAK nucleoprotein 11 62040792 62059238 1.000 7330 5169
TSI NA20796 ZNF264 zinc finger protein 264 19 62408577 62416161 0.999 1276 888
TSI NA20801 GPR128 G protein-coupled receptor 128 3 101811391 101896535 0.998 14747 8265
TSI NA20772 STX16 syntaxin 16 20 56660469 56684753 0.998 2101 1605
TSI NA20769 MRPS6 mitochondrial ribosomal protein S6 21 34419511 34436770 0.998 1585 1203
TSI NA20774 ELAVL4 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) 1 50383216 50439437 0.998 782 567
TSI NA20804 CYP2A13 cytochrome P450, family 2, subfamily A, polypeptide 13 19 46291375 46293686 0.997 1289 984
TSI NA20774 CREB5 cAMP responsive element binding protein 5 7 28494318 28825421 0.996 1435 954
TSI NA20796 ZNF32 zinc finger protein 32 10 43459504 43461587 0.996 911 646
TSI NA20520 C6orf145 chromosome 6 open reading frame 145 6 3668852 3683381 0.995 2015 1601
CEU NA12348 GDNF glial cell derived neurotrophic factor 5 37851510 37870647 0.994 306 217
CHB NA18561 PSMB4 proteasome (prosome, macropain) subunit, beta type, 4 1 149638688 149640730 0.986 3461 2216
CEU NA12546 DAZAP2 DAZ associated protein 2 12 49920394 49922509 0.985 2265 1651
TSI NA20752 AATF apoptosis antagonizing transcription factor 17 32380539 32488077 0.976 1157 843
CEU NA12749 PAQR5 progestin and adipoQ receptor family member V 15 67439474 67483215 0.976 1684 1239
TSI NA20769 BCL2L11 BCL2-like 11 (apoptosis facilitator) 2 111597794 111638279 0.965 1813 1435
TSI NA20804 PILRA paired immunoglobin-like type 2 receptor alpha 7 99809603 99835466 0.909 962 752
TSI NA20589 C8orf85 chromosome 8 open reading frame 85 8 118019664 118024121 0.903 147 91
TSI NA20752 CCKAR cholecystokinin A receptor 4 26092358 26100987 0.902 712 532
JPT NA18973 HBG2 hemoglobin, gamma G 11 5278820 5523329 0.901 4151 3094
TSI NA20774 HIPK1 homeodomain 1 114298778 114317657 0.900 2374 1626
TSI NA20774 ODC1 ornithine decarboxylase 1 2 10498301 10502609 0.897 1489 935
TSI NA20796 STBD1 starch binding domain 1 4 77446947 77450177 0.885 978 664
TSI NA20589 CRIPAK cysteine-rich PAK1 inhibitor 4 1378300 1379640 0.877 76 38
YRI NA19189 PSMB4 proteasome (prosome, macropain) subunit, beta type, 4 1 149638688 149640730 0.853 2622 2090
TSI NA20774 STX16 syntaxin 16 20 56660469 56684753 0.811 949 704
JPT NA18980 CES1 carboxylesterase 1 (monocyte/macrophage serine esterase 1) 16 54401930 54424468 0.788 1679 1036
TSI NA20774 PAQR5 progestin and adipoQ receptor family member V 15 67439474 67483215 0.788 1048 676
CHB NA18561 CRNN cornulin 1 150648694 150651333 0.778 4845 3172
TSI NA20774 DKK4 dickkopf homolog 4 (Xenopus laevis) 8 42350775 42353720 0.760 493 362
TSI NA20589 NOM1 nucleolar protein with MIF4G domain 1 7 156435193 156455158 0.740 1052 801
TSI NA20769 RNF122 ring finger protein 122 8 33525813 33535831 0.734 2574 2004
TSI NA20796 ZNF521 zinc finger protein 521 18 20896674 21184908 0.721 3536 2738
TSI NA20769 VLDLR very low density lipoprotein receptor 9 2625453 2631499 0.676 2092 1624

Wu et al.

Wu et al. BMC Bioinformatics 2012 13:305   doi:10.1186/1471-2105-13-305

Open Data