Additional file 2.

Overview of HPCall base-calling pipeline. Overview of the HPCall base-calling pipeline. Different source files are merged in a data preparation step before the base-calling takes place. The output of the pipeline contains base-called sequence reads, Phred-like quality scores, and base-calling probabilities for the different HPLs.

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Beuf et al. BMC Bioinformatics 2012 13:303   doi:10.1186/1471-2105-13-303