Table 5

Comparison of the present work with previously published algorithms, Benchmark 2
Algorithm1 Time2 1-domain 2-domain 3-domain 4-domain Overall3
SS Algorithm 5s 86% (0.75) 64% (0.47) 60% (0.46) 0% (−0.03) 69%
CA Algorithm 26s 92% (0.82) 78% (0.69) 76% (0.69) 25% (0.32) 80%
DDomain 497s 94% (0.78) 75% (0.68) 48% (0.56) 25% (0.16) 75%
DomainParser2 398s 98% (0.86) 75% (0.71) 64% (0.60) 50% (0.39) 79%
PDP 99s 92% (0.93) 84% (0.82) 68% (0.69) 75% (0.55) 83%
Random (see text) 1s 71 ± 3% (<0) 15 ± 7% (<0) 1 ± 2% (<0) 0% (<0) 31 ± 3%

Present work compared to DDomain [12] (using AUTHORS parameters), DomainParser2 [13] and PDP [11] on the Benchmark 2 data set. Matthews correlation coefficient is given in parentheses. 1CA refers to the α-carbon based algorithm and SS the secondary structure based one. 2Time taken for the actual execution of the binaries or detection algorithms over the full dataset on a single 2.93 GHz i7 CPU. 3Total, regardless of number of domains.

Feldman

Feldman BMC Bioinformatics 2012 13:286   doi:10.1186/1471-2105-13-286

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