Table 4

True SNPs found among the top 100 SNPs identified by CAR scores in at least 50 of the 200 repetitions for Q1 and Q2
SNP Frequency MAF BETA Correlation
Q1 0.014
ARNT | C1S6533 88 0.011478 0.56190
FLT1 | C13S431 110 0.017217 0.74136 0.147
FLT1 | C13S522 200 0.027977 0.61830 0.147
FLT1 | C13S523 200 0.066714 0.64997 0.147
FLT1 | C13S524 164 0.004304 0.62223 0.147
KDR | C4S1877 145 0.000717 1.07706 0.111
KDR | C4S1878 101 0.164993 0.13573 0.111
KDR | C4S1884 95 0.020803 0.29558 0.111
VEGFA | C6S2981 69 0.002152 1.20645
VEGFC | C4S4935 91 0.000717 1.35726
Q2 0.008
BCHE | C3S4869 54 0.000717 1.01569 0.001
BCHE | C3S4875 59 0.000717 1.09484 0.001
LPL | C8S442 69 0.015782 0.49459
SIRT1 | C10S3048 54 0.002152 0.83224 0.330
SIRT1 | C10S3050 72 0.002152 0.97060 0.330
VNN1 | C6S5380 138 0.170732 0.24437
VNN3 | C6S5441 59 0.098278 0.27053 0.066
VNN3 | C6S5449 57 0.010043 0.66909 0.066

The last column shows the average absolute correlation among all SNPs for Q1 and Q2 as well as the average absolute correlation for the SNPs belonging to one gene.

Zuber et al.

Zuber et al. BMC Bioinformatics 2012 13:284   doi:10.1186/1471-2105-13-284

Open Data