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Open Access Research article

Multi-scale RNA comparison based on RNA triple vector curve representation

Ying Li1, Ming Duan2 and Yanchun Liang1*

Author Affiliations

1 College of Computer Science and Technology, Symbol Computation and Knowledge Engineering Lab of Ministry of Education, Jilin University, Changchun, China

2 Key Laboratory of Zoonoses of Ministry of Education, Jilin University, Changchun, China

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BMC Bioinformatics 2012, 13:280  doi:10.1186/1471-2105-13-280

Published: 30 October 2012

Additional files

Additional file 1: Figure S1:

The Phylogenetic tree by RNApdist using Unweighted Pair Group Method with Arithmetic Mean (UPGMA) for the four RNA classes (5S rRNA, miRNA, RNaseP arch and tRNA). Figure S2: The Phylogenetic tree by RNAdistance using Unweighted Pair Group Method with Arithmetic Mean (UPGMA) using Unweighted Pair Group Method with Arithmetic Mean (UPGMA) for the four RNA classes (5S rRNA, miRNA, RNaseP arch and tRNA). Figure S3: Largest structure mutation for 21 RNA Ribosomal sequences using RNAmscTV-Curve, RNAdistance and RNApdist.

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Open Data

Additional file 2: Table S1:

21 ribosomal RNA fragments of thermus thermophilus HB8. Table S2: The mutations with the largest difference from the wild types of 21 ribosomal RNA fragments using RNAmscTV-Curve, RNAdistance and RNApdist.

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Open Data