Table 2

The top 30 predictions of imprinted genes based on mRNA-Seq data from Group I and Group II samples
SNP(rs#) Chr Location Str Posterior GeneID Symbol SS FDR Group
11538691 chr17 4789783 + 1 5216 PFN1 9 0 I
178412 chr7 73173272 - 1 3984 LIMK1 8 0 I
17094371 chr14 57677831 + 1 145407 C14orf37 9 0 I
2596331 chr1 143820905 - 0.999996 9554 SEC22B 7 0.26 I
8110904 chr19 47723208 + 0.999995 634 CEACAM1 4 0 I
11555395 chr17 67629054 + 0.999993 6662 SOX9 5 0 I
4015375 chr7 89628110 + 0.99997 26872 STEAP1 6 0 I
4015375 chr7 89628110 + 0.99997 256227 MGC87042 6 0 I
10208923 chr2 141157767 + 0.9998 53353 LRP1B 5 0 I
9807047 chr17 46229893 + 0.999751 731414 LOC731414 7 0 I
584959 chr3 61703763 + 0.995669 100128936 RPL10AP6 9 0.052 I
10800864 chr1 201003241 + 0.995398 10765 KDM5B 9 0.052 I
10306 chr10 74437407 - 0.993645 5033 P4HA1 4 0 I
2009646 chr5 108148856 + 0.989758 2241 FER 6 0 I
2009646 chr5 108148856 + 0.989758 643534 LOC643534 6 0 I
178412 chr7 73173272 - 1 3984 LIMK1 11 0.098 II
11538691 chr17 4789783 + 1 5216 PFN1 20 0.023 II
11541557 chr1 226352225 + 1 375 ARF1 9 0 II
17492855 chr2 158989711 + 0.999999 130940 CCDC148 18 0.014 II
2352731 chr3 144378737 + 0.999995 5089 PBX2 10 0.072 II
1065453 chr7 99755171 - 0.999992 441272 SPDYE3 5 0 II
11066116 chr12 110915447 + 0.999989 89894 TMEM116 8 0 II
2499 chr6 30021520 - 0.999982 3105 HLA-A 7 0.26 II
3093976 chr6 31610839 - 0.99993 7919 BAT1 8 0.12 II
705 chr15 22770604 + 0.999919 6638 SNRPN 20 0.023 II
705 chr15 22770604 + 0.999919 8926 SNURF 20 0.023 II
3132453 chr6 31712022 - 0.999913 7916 BAT2 4 0 II
1051470 chr12 117067614 + 0.999874 5037 PEBP1 14 0.051 II
1364261 chr16 70597171 - 0.999859 100130263 LOC100130263 8 0 II
11160608 chr14 100382845 + 0.999796 100130955 LOC100130955 20 0.023 II

Abbreviations: rs#-SNP identification number, Chr-chromosome, Str-strand, SS-sample size.

Li et al.

Li et al. BMC Bioinformatics 2012 13:271   doi:10.1186/1471-2105-13-271

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