Table 5

Length dependency of success rate
Range 10-23 24-36 37-56 57-77 78-98 99-117 118-151 152-269 270-311 312-1037
Av. length 17.9 29.4 46.2 69.8 86.7 108.0 127.7 205.6 293.8 528.0
Bin size 38 34 36 41 34 36 35 36 36 37
Frnakenstein 0.50 0.50 0.56 0.76 0.62 0.44 0.97 0.47 0.17 0.22
MODENA 0.47 0.50 0.56 0.76 0.59 0.44 0.97 0.44 0.03 0.14
INFO-RNA 0.50 0.50 0.56 0.78 0.65 0.53 0.91 0.50 0.28 0.19
RNAinverse 0.50 0.50 0.56 0.78 0.62 0.42 0.97 0.42 0.08 0.00
NUPACK 0.50 0.50 0.56 0.78 0.56 0.44 0.97 0.47 0.14 0.16
Inv 0.44 0.38 0.47 0.51 0.15 0 0 0 0 0

The 363 unique structures of the RNASTRAND data set were binned according to length in 10 bins of roughly equal size, and for each bin, the range of lengths covered by the bin, the average length of structures in the bin, the number of structures in the bin are listed, as well as the success ratio on each bin computed for each method.

Lyngsø et al.

Lyngsø et al. BMC Bioinformatics 2012 13:260   doi:10.1186/1471-2105-13-260

Open Data