Table 4

Examples of pre-miRNAs with multiple interspersed hits but not classified as TE or TE-derived by ncRNAclassifier
pre-miRNA name Genome Similar hits Chromosomes
CEL-MIR-1832 Nematode 32 5
CEL-MIR-1833 Nematode 11 4
CIN-MIR-4105 Sea squirt 13 11
CIN-MIR-4154 Sea squirt 34 28
HSA-MIR-320d-2 Human 9 7
HSA-MIR-466 Human 15 12
HSA-MIR-1233-1 Human 24 6
HSA-MIR-3669 Human 9 6
MMU-MIR-297a-6 Mouse 28 10
MMU-MIR-467g Mouse 23 12
RNO-MIR-466b-2 Rat 5 4
XTR-MIR-427-1 Frog 7 7

Tempel et al.

Tempel et al. BMC Bioinformatics 2012 13:246   doi:10.1186/1471-2105-13-246

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