Table 3

TEs families involved in pre-miRNAs
MITE Other DNA LTR / CR1 / L1 SINE Other Others
mariner MITEs transposons ERV RTE Non-LTR
Frog TE-derived 1
mis-annotated
Human TE-derived 11 11 8 20 22 18 40 3 5
mis-annotated 65 32 33 19 41 58 5
Mouse TE-derived 1 13 24 5 19 1 32 3 1
mis-annotated 5 2 17 7 11 28 7
Nematode TE-derived 1 1 1 1
mis-annotated 1 1
Rat TE-derived 1 2 1 10 7
mis-annotated 3 1 15 11
Sea squirt TE-derived 1 1 1 1 2
mis-annotated 1 1

TEs families involved in pre-miRNAs. The table gives the number of times TE families are identified by ncRNAclassifier in frog, human, mouse, nematode, rat and sea squirt pre-miRNAs. If a precursor contains two or more TE fragments, we counted each fragment.

Tempel et al.

Tempel et al. BMC Bioinformatics 2012 13:246   doi:10.1186/1471-2105-13-246

Open Data