ncRNAclassifier computational pipeline. Giving a ncRNA candidate, the first step is to perform BLAT of the UCSC Genome Browser and to get the ten most similar hits. The second step is then to align these hits by ClustalW in order to get a consensus sequence that is extended. The last step is finally to match the extended consensus sequence with RepBase database using CENSOR of EBI.
Tempel et al. BMC Bioinformatics 2012 13:246 doi:10.1186/1471-2105-13-246