Table 1 |
|
| Major new features | |
| Ontology classes | Compound-Mediated-Translation-Regulation (riboswitches) |
| Allosteric-Regulation-of-RNAP | |
| Visualizations | Regulation Summary Diagram (section The regulation summary diagram) |
| Specialized Signaling Pathway display and editing (section Pathway diagrams) | |
| Port of Regulatory Overview (section Regulatory overview) to BioCyc website | |
| Computational Analyses | Object Group Operations and Regulation Enrichment Analysis (section Object group operations and regulation-enrichment analysis) Export of Regulatory Network |
| to XGMML (Cytoscape) (section Export to cytoscape) Ranking Genes According | |
| to Regulatory Influence (section Ranking genes according to regulatory influence) | |
| Web services access to regulatory data | |
Regulation-related features or capabilities described in this paper that are new in Pathway Tools since the last major Pathway Tools paper [1].
Paley et al. BMC Bioinformatics 2012 13:243 doi:10.1186/1471-2105-13-243
