|Major new features|
|Ontology classes||Compound-Mediated-Translation-Regulation (riboswitches)|
|Visualizations||Regulation Summary Diagram (section The regulation summary diagram)|
|Specialized Signaling Pathway display and editing (section Pathway diagrams)|
|Port of Regulatory Overview (section Regulatory overview) to BioCyc website|
|Computational Analyses||Object Group Operations and Regulation Enrichment Analysis (section Object group operations and regulation-enrichment analysis) Export of Regulatory Network|
|to XGMML (Cytoscape) (section Export to cytoscape) Ranking Genes According|
|to Regulatory Influence (section Ranking genes according to regulatory influence)|
|Web services access to regulatory data|
Regulation-related features or capabilities described in this paper that are new in Pathway Tools since the last major Pathway Tools paper .
Paley et al.
Paley et al. BMC Bioinformatics 2012 13:243 doi:10.1186/1471-2105-13-243