Open Access Research article

Ranked retrieval of segmented nuclei for objective assessment of cancer gene repositioning

William J Cukierski123*, Kaustav Nandy4, Prabhakar Gudla4, Karen J Meaburn5, Tom Misteli5, David J Foran123 and Stephen J Lockett4

Author Affiliations

1 Rutgers University, New Brunswick, NJ, 08903, USA

2 Cancer Institute of New Jersey, New Brunswick, NJ, 08903, USA

3 University of Medicine and Dentistry of New Jersey, New BrunswickNJ, 08903, USA

4 Optical Microscopy and Analysis Laboratory, Advanced Technology Program, Science Applications International Corporation-Frederick, Inc., Frederick National Laboratory for Cancer Research, Frederick, MD, 21702, USA

5 National Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA

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BMC Bioinformatics 2012, 13:232  doi:10.1186/1471-2105-13-232

Published: 12 September 2012

Additional files

Additional file 1:

Spatial Errors in the Cumulative EDT, a detailed confusion matrix for the human reviewers, and a description of features used in the analysis.

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