Table 4

Detected CNVs in a common deletion on Chromosome 8
Method #CN= 0 #CN=1 #CN=3 #Families with Mendelian errors Time (min.)
PennCNV 125 39 102 35 0.19
GFL-Individual 123 97 0 20 0.21
GFL-Pedigree 123 137 0 15 0.09
MSSCAN-Pedigree 123 154 0 15 0.11

Across the various algorithms, subjects are assigned to one of 4 copy numbers. For each algorithm, we report the total numbers of CN≠2 identified, the total number of nuclear families with Mendelian errors, and the average computation time (in minutes) per sample for the analysis of Chromosome 8.

Zhang et al.

Zhang et al. BMC Bioinformatics 2012 13:205   doi:10.1186/1471-2105-13-205

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