Email updates

Keep up to date with the latest news and content from BMC Bioinformatics and BioMed Central.

Open Access Open Badges Software

Enabling dynamic network analysis through visualization in TVNViewer

Ross E Curtis12, Jing Xiang3, Ankur Parikh3, Peter Kinnaird4 and Eric P Xing3*

Author Affiliations

1 Joint Carnegie Mellon, University of Pittsburgh PhD Program in Computational Biology, Pittsburgh, PA, USA

2 Lane Center for Computational Biology, Carnegie Mellon University, Pittsburgh, PA, USA

3 Machine Learning Department, Carnegie Mellon University, Pittsburgh, PA, USA

4 Human Computer Interaction Institute, Carnegie Mellon University, Pittsburgh, PA, USA

For all author emails, please log on.

BMC Bioinformatics 2012, 13:204  doi:10.1186/1471-2105-13-204

Published: 16 August 2012



Many biological processes are context-dependent or temporally specific. As a result, relationships between molecular constituents evolve across time and environments. While cutting-edge machine learning techniques can recover these networks, exploring and interpreting the rewiring behavior is challenging. Information visualization shines in this type of exploratory analysis, motivating the development ofTVNViewer ( webcite), a visualization tool for dynamic network analysis.


In this paper, we demonstrate visualization techniques for dynamic network analysis by using TVNViewer to analyze yeast cell cycle and breast cancer progression datasets.


TVNViewer is a powerful new visualization tool for the analysis of biological networks that change across time or space.

Visualization; Dynamic network analysis; Gene expression analysis