Table 2

Comparison of normalization factor estimators on NF κ B ChIP-seq data of cell line GM12878
NCIS CCAT SPP CisGenome PeakSeq
<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/199/mathml/M25','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/199/mathml/M25">View MathML</a> 1.758 1.657 1.834 2.123 1.883
<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/199/mathml/M26','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/199/mathml/M26">View MathML</a> 0.895 0.844 0.933 1.082 0.958

The sequencing depth ratio is 1.963.

Liang and Keleş

Liang and Keleş BMC Bioinformatics 2012 13:199   doi:10.1186/1471-2105-13-199

Open Data