Table 1

Comparison of normalization factor estimators on yeast strain SEG1 through the MACS algorithm
<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/199/mathml/M23','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/199/mathml/M23">View MathML</a> <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/199/mathml/M24','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/199/mathml/M24">View MathML</a> #peaks byp-value #peaks by FDR
NCIS 1.265 0.763 1844 1322
CCAT 1.173 0.707 1943 1723
SPP 1.370 0.826 1736 688
CisGenome 1.553 0.937 1547 4
PeakSeq 1.674 1.009 1431 1
MACS 1.658 1 1449 1

The fourth column contains the numbers of detected peaks with p-value 1 e-5. The fifth column contains the numbers of detected peaks at FDR level 0.05.

Liang and Keleş

Liang and Keleş BMC Bioinformatics 2012 13:199   doi:10.1186/1471-2105-13-199

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