Table 5

Run-time analysis of MSD on the viral infection and drug response datasets
Dataset Number Number TS length Time
of genes of examples in seconds
H3N2 23 17 16 295.1
HRV 26 20 10 77.7
Baranzini3A 3 52 7 49.3
Baranzini3B 3 52 7 36.1
Baranzini6 6 52 7 41.1
Baranzini12 12 52 7 64.3
Lin9 9 52 7 48.8
Costa17 17 52 7 131.9

The run time of the MSD method is reported for all datasets. The number of genes, number of examples, the time series length, and the run time in seconds are reported in the table.

Ghalwash and Obradovic

Ghalwash and Obradovic BMC Bioinformatics 2012 13:195   doi:10.1186/1471-2105-13-195

Open Data